PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G170501.1.p
Common NameSb03g018690, SORBIDRAFT_03g018690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 162aa    MW: 19095.7 Da    PI: 7.6365
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G170501.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.64.1e-131198190
                  FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....leHn 86
                          kfY+ YA+evGF ++  ++k        +++   C++eg+++  kkk+e + r +++++t+C  k+k+k+ + ++k e++ +     l Hn
  Sobic.003G170501.1.p 11 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLMHN 94
                          6**************998655.......58999**************999********************997666555443333339*** PP

                  FAR1 87 Hela 90
                          H+++
  Sobic.003G170501.1.p 95 HPCF 98
                          *976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-71198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSFRNREEAR KFYSIYAEEV GFGLCYGNNK PYSYIIHCNN EGNNTYFKKK EELRVRDNTS  60
KKTHCMSKMK LKRIYDENKE EIAVVIEYVD LMHNHPCFKK KQETINLSEH KEKDPVFLEF  120
VDDLQAADVP HHSIQNIVRD MHGGGEHVPI TKRDLENRQL M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461131.11e-115hypothetical protein SORBIDRAFT_02g041255, partial
RefseqXP_002457885.11e-114hypothetical protein SORBIDRAFT_03g018690
TrEMBLC5X4181e-115C5X418_SORBI; Putative uncharacterized protein Sb02g041255 (Fragment)
TrEMBLC5XLB91e-114C5XLB9_SORBI; Putative uncharacterized protein Sb03g018690
STRINGSb02g041255.11e-115(Sorghum bicolor)
STRINGSb03g018690.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Representative plantOGRP3012351